Variant report

Variant	rs11778822
Chromosome Location	chr8:91304567-91304568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10101254	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12550585	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12679551	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1474506	0.81[EUR][1000 genomes]
rs16904279	0.82[EUR][1000 genomes]
rs16904359	0.80[EUR][1000 genomes]
rs1989936	0.85[EUR][1000 genomes]
rs2107072	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2214416	1.00[EUR][1000 genomes]
rs28546857	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2879345	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4735390	0.82[EUR][1000 genomes]
rs4735420	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs726619	0.99[EUR][1000 genomes]
rs726620	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7813747	0.98[EUR][1000 genomes]
rs7814038	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7824559	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7824692	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7825774	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7845926	0.84[EUR][1000 genomes]
rs9297818	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91303400-91310400	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links