Variant report

Variant	rs1989936
Chromosome Location	chr8:91324589-91324590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91322664..91324980-chr8:91327675..91330630,3	K562	blood:
2	chr8:91321939..91323959-chr8:91324352..91326294,2	MCF-7	breast:
3	chr8:91324105..91326422-chr8:91330875..91333777,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10101254	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956586	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11778822	0.85[EUR][1000 genomes]
rs12550585	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679551	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474506	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16904359	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2107072	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2214416	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28546857	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2879345	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4081549	0.84[EUR][1000 genomes]
rs4735390	0.81[ASN][1000 genomes]
rs4735420	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735609	0.81[AMR][1000 genomes]
rs726619	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs726620	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs727099	0.80[AMR][1000 genomes]
rs7813747	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814038	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7824559	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7824692	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825774	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7845926	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9297818	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91314800-91341200	Weak transcription	K562	blood
2	chr8:91321600-91325400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:91321800-91324800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:91322800-91332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:91323800-91327600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:91324000-91326200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:91324200-91325400	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links