Variant report

Variant	rs727099
Chromosome Location	chr8:91335780-91335781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91335243..91337256-chr8:91340396..91342422,2	K562	blood:
2	chr8:91012062..91014770-chr8:91335047..91337250,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10441528	0.86[ASN][1000 genomes]
rs10956586	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956589	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956590	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12542159	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12548764	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12677381	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13263139	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1474506	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1474508	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16904359	0.87[ASN][1000 genomes]
rs16904390	0.89[ASN][1000 genomes]
rs16904419	0.89[ASN][1000 genomes]
rs1989936	0.80[AMR][1000 genomes]
rs2005936	0.84[ASN][1000 genomes]
rs2189254	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35373684	0.89[ASN][1000 genomes]
rs3863251	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3934716	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3934717	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4263818	0.88[ASN][1000 genomes]
rs4286991	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4288425	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4364677	0.88[ASN][1000 genomes]
rs4379493	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4510907	0.87[ASN][1000 genomes]
rs4527927	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs4534167	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4554514	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4567086	0.90[ASN][1000 genomes]
rs4576466	0.96[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734084	0.84[ASN][1000 genomes]
rs4734447	0.93[ASN][1000 genomes]
rs4734449	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734540	0.89[ASN][1000 genomes]
rs4734541	0.89[ASN][1000 genomes]
rs4734704	0.88[ASN][1000 genomes]
rs4734706	0.88[ASN][1000 genomes]
rs4734718	0.87[ASN][1000 genomes]
rs4735609	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61582074	0.84[ASN][1000 genomes]
rs6470976	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6470995	0.88[ASN][1000 genomes]
rs6470998	0.86[ASN][1000 genomes]
rs6470999	0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs6471000	0.87[ASN][1000 genomes]
rs6988658	0.82[ASN][1000 genomes]
rs6996909	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7009336	0.83[ASN][1000 genomes]
rs7009723	0.84[CEU][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs7014679	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs7460798	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7822035	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7827909	0.86[ASN][1000 genomes]
rs7829290	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7844648	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7845673	0.87[ASN][1000 genomes]
rs975976	0.84[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91314800-91341200	Weak transcription	K562	blood
2	chr8:91330600-91343800	Weak transcription	Ovary	ovary
3	chr8:91331400-91336600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:91333600-91336400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:91333800-91336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:91333800-91336400	Weak transcription	HUVEC	blood vessel
7	chr8:91334000-91336200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:91334000-91336400	Weak transcription	Dnd41	blood
9	chr8:91334000-91336600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:91334200-91336400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:91334200-91336600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:91334400-91336400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:91334400-91336400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:91334400-91336400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:91335600-91336600	Weak transcription	Pancreas	Pancrea

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