Variant report

Variant	rs4379493
Chromosome Location	chr8:91352452-91352453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10441528	0.96[ASN][1000 genomes]
rs10956586	0.81[ASN][1000 genomes]
rs10956589	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10956590	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12542159	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12548764	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12677381	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13263139	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1474508	0.81[AMR][1000 genomes]
rs16904390	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904419	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859180	0.81[EUR][1000 genomes]
rs2005936	0.93[ASN][1000 genomes]
rs2189254	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35373684	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3863251	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3934716	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3934717	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4263818	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4286991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4288425	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4364677	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4510907	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4527927	0.97[ASN][1000 genomes]
rs4534167	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4554514	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4567086	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576466	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734084	0.94[ASN][1000 genomes]
rs4734447	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734449	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734540	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734541	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734704	0.97[ASN][1000 genomes]
rs4734706	0.97[ASN][1000 genomes]
rs4734718	0.95[ASN][1000 genomes]
rs4735609	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61582074	0.94[ASN][1000 genomes]
rs6470976	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470995	0.97[ASN][1000 genomes]
rs6470998	0.96[ASN][1000 genomes]
rs6470999	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6471000	0.97[ASN][1000 genomes]
rs6988658	0.92[ASN][1000 genomes]
rs6996909	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7009336	0.92[ASN][1000 genomes]
rs7009723	0.92[ASN][1000 genomes]
rs7014679	0.97[ASN][1000 genomes]
rs727099	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7460798	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822035	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7827909	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7829290	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7844648	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7845673	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975976	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91337000-91353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:91352000-91364400	Weak transcription	K562	blood

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