Variant report

Variant	rs7827909
Chromosome Location	chr8:91374909-91374910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91374706..91376226-chr8:91379738..91382267,2	MCF-7	breast:
2	chr8:91366748..91369892-chr8:91373800..91376139,3	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10441528	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956589	0.84[CEU][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10956590	0.84[CEU][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.87[ASN][1000 genomes]
rs12542159	0.87[ASN][1000 genomes]
rs12548764	0.91[ASN][1000 genomes]
rs12677381	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13263139	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16904390	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904410	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs16904419	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2005936	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2189254	0.91[ASN][1000 genomes]
rs35373684	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3863251	0.97[ASN][1000 genomes]
rs3934716	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3934717	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236770	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4263818	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4286991	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4288425	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4364677	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379493	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4510907	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4527927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534167	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4554514	0.97[ASN][1000 genomes]
rs4567086	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4576466	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734084	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734447	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734449	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734540	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734541	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734704	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734706	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734709	0.82[EUR][1000 genomes]
rs4734718	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735609	0.86[ASN][1000 genomes]
rs61582074	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62530363	0.82[EUR][1000 genomes]
rs6470976	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470995	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470998	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471000	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988658	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996909	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6999291	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7009336	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7009723	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7014679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727099	0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7460798	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822035	0.97[ASN][1000 genomes]
rs7829290	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844648	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845673	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs975976	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7827909	TMEM64	cis	cerebellum	SCAN
rs7827909	RUNX1T1	cis	cerebellum	SCAN
rs7827909	DECR1	cis	parietal	SCAN
rs7827909	MMP16	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91365200-91375800	Weak transcription	K562	blood
2	chr8:91373600-91375000	Enhancers	Brain Germinal Matrix	brain
3	chr8:91374400-91375000	Active TSS	Brain Angular Gyrus	brain
4	chr8:91374400-91375000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:91374800-91375000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links