Variant report

Variant	rs6470999
Chromosome Location	chr8:91381801-91381802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90995332..90997993-chr8:91380927..91383301,3	K562	blood:
2	chr8:91374706..91376226-chr8:91379738..91382267,2	MCF-7	breast:
3	chr8:91380990..91383900-chr8:91393535..91395654,2	K562	blood:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10441528	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956589	0.84[CEU][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10956590	0.84[CEU][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.87[ASN][1000 genomes]
rs12542159	0.87[ASN][1000 genomes]
rs12548764	0.91[ASN][1000 genomes]
rs12677381	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13263139	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16904390	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904410	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs16904419	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2005936	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2189254	0.91[ASN][1000 genomes]
rs35373684	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3863251	0.97[ASN][1000 genomes]
rs3934716	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3934717	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236770	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4263818	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4286991	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4288425	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4364677	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379493	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4510907	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4527927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534167	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4554514	0.97[ASN][1000 genomes]
rs4567086	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4576466	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734084	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734447	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734449	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4734540	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734541	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734704	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734706	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734709	0.83[EUR][1000 genomes]
rs4734718	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735609	0.86[ASN][1000 genomes]
rs61582074	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62530363	0.83[EUR][1000 genomes]
rs6470976	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6470995	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470998	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471000	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988658	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996909	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6999291	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7009336	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7009723	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7014679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727099	0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7460798	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7822035	0.97[ASN][1000 genomes]
rs7827909	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829290	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844648	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845673	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs975976	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6470999	MMP16	cis	parietal	SCAN
rs6470999	DECR1	cis	parietal	SCAN
rs6470999	TMEM64	cis	cerebellum	SCAN
rs6470999	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91376600-91382600	Weak transcription	K562	blood
2	chr8:91381600-91382000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:91381600-91383600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:91381800-91383800	Enhancers	Fetal Heart	heart

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