Variant report

Variant	rs6999291
Chromosome Location	chr8:91397407-91397408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91395440..91397749-chr8:91417370..91420157,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10441528	0.86[EUR][1000 genomes]
rs16904390	0.81[EUR][1000 genomes]
rs16904419	0.82[EUR][1000 genomes]
rs2005936	0.86[EUR][1000 genomes]
rs35373684	0.82[EUR][1000 genomes]
rs3934716	0.82[EUR][1000 genomes]
rs3934717	0.82[EUR][1000 genomes]
rs4263818	0.82[EUR][1000 genomes]
rs4364677	0.82[EUR][1000 genomes]
rs4510907	0.82[EUR][1000 genomes]
rs4527927	0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs4567086	0.81[EUR][1000 genomes]
rs4576466	0.81[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap]
rs4734084	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4734447	0.81[EUR][1000 genomes]
rs4734540	0.82[EUR][1000 genomes]
rs4734541	0.82[EUR][1000 genomes]
rs4734704	0.86[EUR][1000 genomes]
rs4734706	0.86[EUR][1000 genomes]
rs4734718	0.85[EUR][1000 genomes]
rs61582074	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6470995	0.86[EUR][1000 genomes]
rs6470998	0.86[EUR][1000 genomes]
rs6470999	0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471000	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6988658	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7009336	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7009723	0.82[CHD][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs7014679	0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs7827909	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7829290	0.86[EUR][1000 genomes]
rs7844648	0.86[EUR][1000 genomes]
rs7845673	0.82[EUR][1000 genomes]
rs975976	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6999291	RUNX1T1	cis	cerebellum	SCAN
rs6999291	DECR1	cis	parietal	SCAN
rs6999291	TMEM64	cis	cerebellum	SCAN
rs6999291	MMP16	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91395000-91433400	Weak transcription	K562	blood

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