Variant report

Variant	rs4734540
Chromosome Location	chr8:91360643-91360644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91355349..91357838-chr8:91359194..91361170,2	K562	blood:
2	chr8:91358569..91361084-chr8:91362782..91364560,2	MCF-7	breast:
3	chr8:91354031..91355867-chr8:91359338..91361042,2	MCF-7	breast:
4	chr8:91356198..91358109-chr8:91358342..91361071,2	MCF-7	breast:
5	chr8:91360431..91363123-chr8:91366443..91367986,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10441528	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956586	0.80[ASN][1000 genomes]
rs10956589	0.81[CEU][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs10956590	0.81[CEU][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs12542159	0.88[ASN][1000 genomes]
rs12548764	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12675516	0.82[EUR][1000 genomes]
rs12677381	0.98[ASN][1000 genomes]
rs13263139	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13264065	0.82[EUR][1000 genomes]
rs13265958	0.82[EUR][1000 genomes]
rs16904390	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16904410	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs16904419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859181	0.82[EUR][1000 genomes]
rs2005936	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2189254	0.93[ASN][1000 genomes]
rs34482521	0.81[EUR][1000 genomes]
rs34813000	0.83[EUR][1000 genomes]
rs35373684	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3863251	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924374	0.82[EUR][1000 genomes]
rs3924375	0.82[EUR][1000 genomes]
rs3934716	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3934717	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236770	0.88[CEU][hapmap]
rs4263818	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4286991	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288425	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4364677	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4379493	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4510907	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4527927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534167	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4554514	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4567086	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4576466	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734084	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734445	0.81[EUR][1000 genomes]
rs4734446	0.81[EUR][1000 genomes]
rs4734447	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734449	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734704	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734706	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734718	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735609	0.89[ASN][1000 genomes]
rs55763235	0.82[EUR][1000 genomes]
rs61582074	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470976	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470995	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470998	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471000	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988658	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6996909	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999291	0.82[EUR][1000 genomes]
rs7009336	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7009723	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727099	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs7460798	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822035	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827909	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7829290	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844648	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845673	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975976	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91352000-91364400	Weak transcription	K562	blood
2	chr8:91357800-91363200	Weak transcription	Fetal Stomach	stomach
3	chr8:91358000-91361800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:91358200-91362000	Weak transcription	NH-A	brain
5	chr8:91358400-91361800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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