Variant report

Variant	rs16904410
Chromosome Location	chr8:91366482-91366483
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91365455..91367802-chr8:91429981..91431804,2	MCF-7	breast:
2	chr8:91362666..91366096-chr8:91366206..91370463,4	K562	blood:
3	chr8:91360431..91363123-chr8:91366443..91367986,2	K562	blood:
4	chr8:91013482..91015040-chr8:91365554..91368066,2	MCF-7	breast:
5	chr8:91364247..91365968-chr8:91366433..91369668,3	K562	blood:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12675516	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13264065	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13265958	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16904390	0.83[EUR][1000 genomes]
rs16904419	0.83[EUR][1000 genomes]
rs1859179	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1859180	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1859181	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34409029	0.86[EUR][1000 genomes]
rs34482521	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34813000	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35373684	0.83[EUR][1000 genomes]
rs35646771	0.87[EUR][1000 genomes]
rs3924374	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3924375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3934716	0.83[EUR][1000 genomes]
rs3934717	0.83[EUR][1000 genomes]
rs4236770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4263818	0.83[EUR][1000 genomes]
rs4364677	0.82[EUR][1000 genomes]
rs4510907	0.83[EUR][1000 genomes]
rs4527927	0.92[CEU][hapmap]
rs4567086	0.82[EUR][1000 genomes]
rs4576466	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4734445	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734446	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734447	0.82[EUR][1000 genomes]
rs4734540	0.83[EUR][1000 genomes]
rs4734541	0.83[EUR][1000 genomes]
rs4734709	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55763235	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62530363	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6470999	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs7009723	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs7014679	0.92[CEU][hapmap]
rs7845673	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16904410	MMP16	cis	parietal	SCAN
rs16904410	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91365200-91375800	Weak transcription	K562	blood
2	chr8:91366400-91367200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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