Variant report

Variant	rs13265958
Chromosome Location	chr8:91350756-91350757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12675516	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13264065	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904390	0.84[EUR][1000 genomes]
rs16904410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16904419	0.82[EUR][1000 genomes]
rs1859179	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1859180	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1859181	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34409029	0.87[EUR][1000 genomes]
rs34482521	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34813000	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35373684	0.82[EUR][1000 genomes]
rs35646771	0.85[EUR][1000 genomes]
rs3924374	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3924375	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3934716	0.82[EUR][1000 genomes]
rs3934717	0.82[EUR][1000 genomes]
rs4236770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4263818	0.82[EUR][1000 genomes]
rs4364677	0.81[EUR][1000 genomes]
rs4510907	0.82[EUR][1000 genomes]
rs4527927	0.92[CEU][hapmap]
rs4567086	0.83[EUR][1000 genomes]
rs4576466	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4734445	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734446	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734447	0.83[EUR][1000 genomes]
rs4734540	0.82[EUR][1000 genomes]
rs4734541	0.82[EUR][1000 genomes]
rs4734709	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55763235	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62530363	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470999	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs7009723	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs7014679	0.92[CEU][hapmap]
rs7845673	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13265958	RUNX1T1	cis	cerebellum	SCAN
rs13265958	MMP16	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91337000-91353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:91350600-91352000	Strong transcription	K562	blood

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