Variant report

Variant	rs1859180
Chromosome Location	chr8:91339621-91339622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91337268..91339876-chr8:91344635..91346425,2	K562	blood:
2	chr8:91319545..91321179-chr8:91338128..91339720,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10956589	0.92[CEU][hapmap]
rs10956590	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs12548764	0.83[EUR][1000 genomes]
rs12675516	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13263139	0.82[EUR][1000 genomes]
rs13264065	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13265958	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904410	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1859179	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859181	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34482521	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34813000	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3863251	0.82[EUR][1000 genomes]
rs3924374	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3924375	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4236770	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4286991	0.80[EUR][1000 genomes]
rs4379493	0.81[EUR][1000 genomes]
rs4534167	0.81[EUR][1000 genomes]
rs4554514	0.82[EUR][1000 genomes]
rs4576466	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs4734445	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734446	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734449	0.82[EUR][1000 genomes]
rs4734709	0.84[ASN][1000 genomes]
rs55763235	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62530363	0.84[ASN][1000 genomes]
rs6470976	0.81[EUR][1000 genomes]
rs6996909	0.81[EUR][1000 genomes]
rs727099	0.92[CEU][hapmap]
rs7822035	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1859180	RUNX1T1	cis	cerebellum	SCAN
rs1859180	MMP16	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91314800-91341200	Weak transcription	K562	blood
2	chr8:91330600-91343800	Weak transcription	Ovary	ovary
3	chr8:91337000-91353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:91337800-91342600	Weak transcription	Dnd41	blood

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