Variant report

Variant	rs3863251
Chromosome Location	chr8:91354611-91354612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91354031..91355867-chr8:91359338..91361042,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10441528	0.97[ASN][1000 genomes]
rs10956586	0.80[ASN][1000 genomes]
rs10956589	0.96[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956590	0.96[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12542159	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548764	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12677381	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13263139	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904390	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904410	0.81[CEU][hapmap]
rs16904419	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859180	0.82[EUR][1000 genomes]
rs2005936	0.94[ASN][1000 genomes]
rs2189254	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35373684	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3934716	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3934717	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4263818	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4286991	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4288425	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4364677	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4379493	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4510907	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4527927	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4534167	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4554514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567086	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4576466	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734084	0.95[ASN][1000 genomes]
rs4734447	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734449	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734540	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734541	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734704	0.97[ASN][1000 genomes]
rs4734706	0.97[ASN][1000 genomes]
rs4734718	0.94[ASN][1000 genomes]
rs4735609	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61582074	0.95[ASN][1000 genomes]
rs6470976	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470995	0.97[ASN][1000 genomes]
rs6470998	0.97[ASN][1000 genomes]
rs6470999	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6471000	0.97[ASN][1000 genomes]
rs6988658	0.93[ASN][1000 genomes]
rs6996909	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7009336	0.93[ASN][1000 genomes]
rs7009723	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7014679	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs727099	0.96[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7460798	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822035	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827909	0.97[ASN][1000 genomes]
rs7829290	0.97[ASN][1000 genomes]
rs7844648	0.97[ASN][1000 genomes]
rs7845673	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975976	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91352000-91364400	Weak transcription	K562	blood
2	chr8:91353400-91357800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:91354400-91354800	Enhancers	Ovary	ovary
4	chr8:91354600-91357200	Weak transcription	HMEC	breast

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