Variant report

Variant	rs10956586
Chromosome Location	chr8:91334498-91334499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10956589	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956590	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12542159	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548764	0.83[ASN][1000 genomes]
rs13263139	0.82[ASN][1000 genomes]
rs1474506	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16904359	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904390	0.80[ASN][1000 genomes]
rs16904419	0.80[ASN][1000 genomes]
rs1989936	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35373684	0.80[ASN][1000 genomes]
rs3863251	0.80[ASN][1000 genomes]
rs4286991	0.80[ASN][1000 genomes]
rs4379493	0.81[ASN][1000 genomes]
rs4527927	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs4554514	0.80[ASN][1000 genomes]
rs4567086	0.81[ASN][1000 genomes]
rs4576466	0.92[CEU][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap]
rs4734447	0.83[ASN][1000 genomes]
rs4734449	0.80[ASN][1000 genomes]
rs4734540	0.80[ASN][1000 genomes]
rs4734541	0.80[ASN][1000 genomes]
rs4735609	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6470999	0.80[CEU][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap]
rs6996909	0.80[ASN][1000 genomes]
rs7009723	0.80[CEU][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap]
rs7014679	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs727099	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7460798	0.81[ASN][1000 genomes]
rs7822035	0.80[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10956586	MMP16	cis	parietal	SCAN
rs10956586	TMEM64	cis	cerebellum	SCAN
rs10956586	RUNX1T1	cis	cerebellum	SCAN
rs10956586	DECR1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91314800-91341200	Weak transcription	K562	blood
2	chr8:91330600-91343800	Weak transcription	Ovary	ovary
3	chr8:91331400-91336600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:91333200-91334600	Enhancers	Pancreas	Pancrea
5	chr8:91333600-91336400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:91333800-91336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:91333800-91336400	Weak transcription	HUVEC	blood vessel
8	chr8:91334000-91336200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:91334000-91336400	Weak transcription	Dnd41	blood
10	chr8:91334000-91336600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:91334200-91336400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:91334200-91336600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:91334400-91336400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:91334400-91336400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:91334400-91336400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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