Variant report

Variant	rs4567086
Chromosome Location	chr8:91357436-91357437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91355349..91357838-chr8:91359194..91361170,2	K562	blood:
2	chr8:91340563..91342702-chr8:91356361..91357965,2	K562	blood:
3	chr8:91356198..91358109-chr8:91358342..91361071,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10441528	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956586	0.81[ASN][1000 genomes]
rs10956589	0.84[CEU][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs10956590	0.84[CEU][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs12542159	0.89[ASN][1000 genomes]
rs12548764	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12675516	0.83[EUR][1000 genomes]
rs12677381	0.97[ASN][1000 genomes]
rs13263139	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13264065	0.83[EUR][1000 genomes]
rs13265958	0.83[EUR][1000 genomes]
rs16904390	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904410	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs16904419	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859181	0.82[EUR][1000 genomes]
rs2005936	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2189254	0.93[ASN][1000 genomes]
rs34482521	0.82[EUR][1000 genomes]
rs34813000	0.82[EUR][1000 genomes]
rs35373684	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3863251	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3924374	0.83[EUR][1000 genomes]
rs3924375	0.83[EUR][1000 genomes]
rs3934716	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3934717	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236770	0.92[CEU][hapmap]
rs4263818	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4286991	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4288425	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4364677	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4379493	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510907	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4527927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4534167	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4554514	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4576466	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734084	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734445	0.82[EUR][1000 genomes]
rs4734446	0.82[EUR][1000 genomes]
rs4734447	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734449	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734540	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734541	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734704	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734706	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734718	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735609	0.90[ASN][1000 genomes]
rs55763235	0.83[EUR][1000 genomes]
rs61582074	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470976	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470995	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470998	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471000	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988658	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6996909	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6999291	0.81[EUR][1000 genomes]
rs7009336	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7009723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7014679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs727099	0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs7460798	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822035	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7827909	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7829290	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844648	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7845673	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975976	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018991	chr8:91336887-91374274	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91352000-91364400	Weak transcription	K562	blood
2	chr8:91353400-91357800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:91355200-91358000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:91355200-91358400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:91355400-91358000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:91355600-91358600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:91355800-91358000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:91355800-91358000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:91356200-91358200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:91356400-91358000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr8:91356400-91358000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:91356600-91357600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:91356600-91358000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr8:91356800-91357600	Weak transcription	Fetal Stomach	stomach
15	chr8:91357000-91358000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:91357200-91358000	Enhancers	HMEC	breast
17	chr8:91357200-91358200	Enhancers	NH-A	brain
18	chr8:91357400-91357600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:91357400-91357600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:91357400-91358000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:91357400-91358000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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