Variant report

Variant	rs11779103
Chromosome Location	chr8:130506460-130506461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10097701	0.84[EUR][1000 genomes]
rs11778784	0.88[ASN][1000 genomes]
rs12677044	0.87[EUR][1000 genomes]
rs12681345	0.86[EUR][1000 genomes]
rs16904082	0.80[EUR][1000 genomes]
rs16904087	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16904090	0.85[EUR][1000 genomes]
rs16904093	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904094	0.87[EUR][1000 genomes]
rs57568551	0.87[EUR][1000 genomes]
rs60235966	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61677427	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1839602	chr8:130503150-130510068	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130503600-130519600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130504400-130506800	Strong transcription	K562	blood
3	chr8:130506200-130507000	ZNF genes & repeats	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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