Variant report

Variant	rs16904082
Chromosome Location	chr8:130484893-130484894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10097701	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11779103	0.80[EUR][1000 genomes]
rs12677044	0.93[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12681345	0.93[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16904087	0.82[EUR][1000 genomes]
rs16904090	0.92[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16904093	0.81[EUR][1000 genomes]
rs16904094	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1897682	0.93[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1897683	0.92[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs57568551	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61677427	0.81[EUR][1000 genomes]
rs973006	0.92[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130475800-130492000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130483400-130487800	Strong transcription	K562	blood
3	chr8:130484200-130486000	Weak transcription	HSMM	muscle
4	chr8:130484600-130489000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links