Variant report
| Variant | rs11779443 |
|---|---|
| Chromosome Location | chr8:67251631-67251632 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10092482 | 0.89[ASN][1000 genomes] |
| rs10957371 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11775347 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11775711 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11778701 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11779375 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11780639 | 1.00[CEU][hapmap] |
| rs11986630 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11991674 | 0.86[EUR][1000 genomes] |
| rs11998720 | 0.80[EUR][1000 genomes] |
| rs1582808 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2357892 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2884318 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3739334 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap] |
| rs3739337 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap] |
| rs7010700 | 0.83[EUR][1000 genomes] |
| rs7011134 | 0.83[EUR][1000 genomes] |
| rs7817343 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7818340 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7828555 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67250800-67252800 | Enhancers | Placenta | Placenta |
