Variant report

Variant	rs7011134
Chromosome Location	chr8:67317992-67317993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67310457..67313405-chr8:67317320..67319521,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10092482	0.86[ASN][1000 genomes]
rs10095148	0.88[ASN][1000 genomes]
rs10112574	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1030420	0.92[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs10957371	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10957375	0.88[ASN][1000 genomes]
rs11775347	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11775711	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11778701	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11779375	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779443	0.83[EUR][1000 genomes]
rs11780639	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11986630	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11991674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335128	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs1582808	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1978566	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2303519	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2357892	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2884318	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35243406	0.87[AMR][1000 genomes]
rs3739334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3739337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62511167	0.89[AMR][1000 genomes]
rs62511183	0.87[AMR][1000 genomes]
rs7010700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014273	0.88[ASN][1000 genomes]
rs746149	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7817343	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7818340	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828555	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67301800-67319800	Weak transcription	Aorta	Aorta
2	chr8:67307400-67320000	Weak transcription	Liver	Liver
3	chr8:67311400-67318600	Weak transcription	Gastric	stomach
4	chr8:67315000-67319200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:67315400-67318600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:67317400-67318400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:67317400-67318400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:67317400-67318400	Weak transcription	Psoas Muscle	Psoas
9	chr8:67317400-67318600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:67317400-67318600	Weak transcription	Ovary	ovary
11	chr8:67317400-67330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:67317600-67318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:67317600-67318600	Weak transcription	Placenta	Placenta
14	chr8:67317600-67318600	Weak transcription	Left Ventricle	heart
15	chr8:67317600-67319600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:67317600-67319800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:67317800-67318200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:67317800-67318200	Weak transcription	Right Atrium	heart
19	chr8:67317800-67318600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:67317800-67318600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:67317800-67318800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:67317800-67319000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links