Variant report

Variant	rs62511167
Chromosome Location	chr8:67319176-67319177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67310457..67313405-chr8:67317320..67319521,2	MCF-7	breast:
2	chr8:67079708..67082330-chr8:67318402..67319910,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11775347	0.82[AMR][1000 genomes]
rs11986630	0.82[AMR][1000 genomes]
rs11991674	0.89[AMR][1000 genomes]
rs11998720	0.89[AMR][1000 genomes]
rs35243406	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739334	0.89[AMR][1000 genomes]
rs3739337	0.89[AMR][1000 genomes]
rs62511183	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7010700	0.89[AMR][1000 genomes]
rs7011134	0.89[AMR][1000 genomes]
rs746149	0.82[AMR][1000 genomes]
rs7818340	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67301800-67319800	Weak transcription	Aorta	Aorta
2	chr8:67307400-67320000	Weak transcription	Liver	Liver
3	chr8:67315000-67319200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:67317400-67330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:67317600-67319600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:67317600-67319800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:67318400-67319400	Enhancers	Psoas Muscle	Psoas
8	chr8:67318400-67320400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:67318400-67320400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:67318400-67320400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:67318400-67320400	Enhancers	Primary T cells from cord blood	blood
12	chr8:67318600-67319200	Enhancers	Ovary	ovary
13	chr8:67318600-67320000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:67318600-67320000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr8:67318600-67320000	Enhancers	GM12878-XiMat	blood
16	chr8:67318600-67320200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:67318600-67320400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:67318800-67319800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:67318800-67319800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:67318800-67319800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:67318800-67320000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr8:67319000-67319800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr8:67319000-67320200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr8:67319000-67320200	Enhancers	Primary T helper cells fromperipheralblood	blood

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