Variant report

Variant	rs11781122
Chromosome Location	chr8:49826794-49826795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1023768	0.84[CEU][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs10808733	0.81[EUR][1000 genomes]
rs1992374	0.81[EUR][1000 genomes]
rs2891682	0.83[EUR][1000 genomes]
rs6982389	0.84[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49816200-49830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49817800-49832200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49820400-49829200	Weak transcription	NHDF-Ad	bronchial
4	chr8:49823200-49827400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:49824000-49831000	Weak transcription	Fetal Brain Male	brain
6	chr8:49824400-49827400	Weak transcription	NH-A	brain
7	chr8:49824400-49830800	Weak transcription	Adipose Nuclei	Adipose
8	chr8:49824600-49829600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:49824800-49828200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:49825000-49827200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:49825000-49828800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:49825000-49829600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:49825000-49831400	Weak transcription	Aorta	Aorta
14	chr8:49825200-49827200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49825200-49827800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:49825200-49830600	Weak transcription	Fetal Stomach	stomach
17	chr8:49825600-49827600	Weak transcription	Fetal Kidney	kidney
18	chr8:49825800-49827400	Weak transcription	Fetal Lung	lung
19	chr8:49826400-49829200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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