Variant report

Variant	rs11782171
Chromosome Location	chr8:107497249-107497250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10108024	0.80[ASN][1000 genomes]
rs12682235	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13257666	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551269	0.83[ASN][1000 genomes]
rs1621663	0.83[ASN][1000 genomes]
rs1670379	0.81[ASN][1000 genomes]
rs1670387	0.83[ASN][1000 genomes]
rs1670389	0.81[ASN][1000 genomes]
rs1670393	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs1670403	0.83[ASN][1000 genomes]
rs16874768	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16874782	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1789967	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs1789973	0.83[ASN][1000 genomes]
rs1789975	0.81[ASN][1000 genomes]
rs1789976	0.81[ASN][1000 genomes]
rs1789978	0.81[ASN][1000 genomes]
rs1789980	0.83[ASN][1000 genomes]
rs1954749	0.83[ASN][1000 genomes]
rs2123546	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2154668	0.81[ASN][1000 genomes]
rs2186398	0.81[ASN][1000 genomes]
rs2444313	0.83[ASN][1000 genomes]
rs2510813	0.81[ASN][1000 genomes]
rs2602293	0.81[ASN][1000 genomes]
rs35325577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734138	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7015711	0.81[ASN][1000 genomes]
rs7459717	0.89[ASN][1000 genomes]
rs9720184	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107475400-107511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links