Variant report

Variant	rs4734138
Chromosome Location	chr8:107514489-107514490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11782171	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682235	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13257666	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1670381	0.84[ASN][1000 genomes]
rs1670393	0.88[CHB][hapmap]
rs16874768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16874782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789967	0.88[CHB][hapmap]
rs1789980	0.81[AFR][1000 genomes]
rs2123546	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444304	0.80[ASN][1000 genomes]
rs35325577	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7459717	0.97[ASN][1000 genomes]
rs9720184	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107511600-107514600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:107512200-107514600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
4	chr8:107512600-107517800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:107513000-107514600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:107513000-107514800	Enhancers	Brain Anterior Caudate	brain
7	chr8:107513200-107514600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:107513400-107514600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:107513400-107514600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:107513400-107514600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:107513600-107517000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:107513600-107526200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:107513800-107514600	Enhancers	Primary hematopoietic stem cells	blood
14	chr8:107513800-107515400	Weak transcription	Brain Substantia Nigra	brain
15	chr8:107513800-107515600	Weak transcription	Pancreas	Pancrea
16	chr8:107513800-107515800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:107513800-107525000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:107514000-107514600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:107514000-107514600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:107514000-107515400	Weak transcription	HMEC	breast
21	chr8:107514000-107515600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:107514000-107516600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:107514000-107519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:107514000-107525600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:107514200-107519400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:107514400-107515600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:107514400-107515600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:107514400-107516600	Weak transcription	NHDF-Ad	bronchial
29	chr8:107514400-107517000	Weak transcription	Osteobl	bone

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