Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10081471	0.80[EUR][1000 genomes]
rs11775094	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11779433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11786870	0.80[EUR][1000 genomes]
rs11786871	0.80[EUR][1000 genomes]
rs28571803	0.80[EUR][1000 genomes]
rs2879886	0.80[EUR][1000 genomes]
rs62511202	0.88[AFR][1000 genomes]
rs62511208	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62511246	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6474184	0.80[EUR][1000 genomes]
rs6474186	0.80[EUR][1000 genomes]
rs6985496	0.80[EUR][1000 genomes]
rs6989208	0.80[EUR][1000 genomes]
rs7001960	0.80[EUR][1000 genomes]
rs7005260	0.80[EUR][1000 genomes]
rs7006382	0.80[EUR][1000 genomes]
rs7006575	0.80[EUR][1000 genomes]
rs9987219	0.80[EUR][1000 genomes]
rs9987279	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39704800-39717800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:39707400-39717400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:39711800-39717000	Weak transcription	HUVEC	blood vessel
4	chr8:39715200-39717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: