Variant report

Variant	rs2879886
Chromosome Location	chr8:39728842-39728843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10081471	1.00[EUR][1000 genomes]
rs10283406	0.94[EUR][1000 genomes]
rs11779433	0.84[EUR][1000 genomes]
rs11780939	0.97[EUR][1000 genomes]
rs11781590	0.93[EUR][1000 genomes]
rs11782323	0.80[EUR][1000 genomes]
rs11786870	1.00[EUR][1000 genomes]
rs11786871	1.00[EUR][1000 genomes]
rs11988283	0.96[EUR][1000 genomes]
rs28571803	1.00[EUR][1000 genomes]
rs28879756	0.97[EUR][1000 genomes]
rs35669746	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6474183	0.99[EUR][1000 genomes]
rs6474184	1.00[EUR][1000 genomes]
rs6474186	1.00[EUR][1000 genomes]
rs6985496	1.00[EUR][1000 genomes]
rs6989208	1.00[EUR][1000 genomes]
rs6993023	0.90[EUR][1000 genomes]
rs7001960	1.00[EUR][1000 genomes]
rs7005260	1.00[EUR][1000 genomes]
rs7006382	1.00[EUR][1000 genomes]
rs7006575	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9987219	1.00[EUR][1000 genomes]
rs9987279	1.00[EUR][1000 genomes]
rs9987317	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39728400-39730600	Enhancers	HUVEC	blood vessel
2	chr8:39728600-39730200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:39728600-39731400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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