Variant report

Variant	rs35669746
Chromosome Location	chr8:39758182-39758183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10081471	0.93[EUR][1000 genomes]
rs10283406	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11780939	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11781590	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11786870	0.93[EUR][1000 genomes]
rs11786871	0.93[EUR][1000 genomes]
rs11988283	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28571803	0.93[EUR][1000 genomes]
rs2879886	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28879756	0.90[EUR][1000 genomes]
rs6474183	0.91[EUR][1000 genomes]
rs6474184	0.93[EUR][1000 genomes]
rs6474186	0.93[EUR][1000 genomes]
rs6985496	0.93[EUR][1000 genomes]
rs6989208	0.93[EUR][1000 genomes]
rs6993023	0.83[EUR][1000 genomes]
rs7001960	0.93[EUR][1000 genomes]
rs7005260	0.93[EUR][1000 genomes]
rs7006382	0.93[EUR][1000 genomes]
rs7006575	0.93[EUR][1000 genomes]
rs9987219	0.93[EUR][1000 genomes]
rs9987279	0.93[EUR][1000 genomes]
rs9987317	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39754400-39759800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:39757400-39758400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:39757600-39758200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:39757600-39758400	Enhancers	Colon Smooth Muscle	Colon
5	chr8:39757600-39758600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:39757600-39758600	Enhancers	Fetal Lung	lung
7	chr8:39757600-39758600	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:39757800-39758400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:39757800-39758400	Enhancers	Fetal Kidney	kidney
10	chr8:39757800-39758600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:39758000-39758400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:39758000-39758400	Enhancers	Fetal Stomach	stomach
13	chr8:39758000-39758600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:39758000-39758600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:39758000-39758600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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