Variant report
| Variant | rs11988283 |
|---|---|
| Chromosome Location | chr8:39742779-39742780 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10081471 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10283406 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11779433 | 0.83[EUR][1000 genomes] |
| rs11780939 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11781590 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11786870 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11786871 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs28571803 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2879886 | 0.96[EUR][1000 genomes] |
| rs28879756 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35669746 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6474183 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6474184 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6474186 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6985496 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6989208 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6993023 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7001960 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7005260 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7006382 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7006575 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9987219 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9987279 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9987317 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv539555 | chr8:39683857-40673606 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv508505 | chr8:39730094-39791331 | Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:39740000-39744200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
