Variant report

Variant	rs11784016
Chromosome Location	chr8:11366670-11366671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11366501..11369054-chr8:11369431..11373497,4	K562	blood:
2	chr8:11366572..11369135-chr8:11369191..11372086,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf12-2	chr8:11366659-11367400	NONHSAT125062

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10108511	1.00[CHB][hapmap]
rs1042701	1.00[CHB][hapmap]
rs11250146	1.00[CHB][hapmap]
rs11775640	1.00[ASN][1000 genomes]
rs11775779	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11776834	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11777273	1.00[CHB][hapmap]
rs11778177	1.00[ASN][1000 genomes]
rs11780432	1.00[ASN][1000 genomes]
rs11780980	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11781057	1.00[ASN][1000 genomes]
rs11781400	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784897	1.00[ASN][1000 genomes]
rs11786272	1.00[ASN][1000 genomes]
rs11787413	1.00[ASN][1000 genomes]
rs12156238	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13272061	1.00[CHB][hapmap]
rs13280447	1.00[ASN][1000 genomes]
rs13281992	1.00[ASN][1000 genomes]
rs13439415	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13439487	1.00[ASN][1000 genomes]
rs1382567	1.00[CHB][hapmap]
rs1478890	1.00[CHB][hapmap]
rs17744726	1.00[CHB][hapmap]
rs17807523	1.00[ASN][1000 genomes]
rs2127127	1.00[CHB][hapmap]
rs2169888	1.00[ASN][1000 genomes]
rs2245232	1.00[CHB][hapmap]
rs2264306	1.00[CHB][hapmap]
rs2264866	1.00[CHB][hapmap]
rs2409776	1.00[ASN][1000 genomes]
rs2409777	1.00[ASN][1000 genomes]
rs2409779	1.00[ASN][1000 genomes]
rs2409784	1.00[CHB][hapmap]
rs2409798	1.00[CHB][hapmap]
rs2618434	1.00[CHB][hapmap]
rs2736342	1.00[CHB][hapmap]
rs28485693	1.00[ASN][1000 genomes]
rs28680779	1.00[ASN][1000 genomes]
rs34281672	1.00[ASN][1000 genomes]
rs34365278	1.00[ASN][1000 genomes]
rs34443092	1.00[ASN][1000 genomes]
rs34906655	1.00[ASN][1000 genomes]
rs35451013	1.00[ASN][1000 genomes]
rs35619722	1.00[ASN][1000 genomes]
rs35620480	1.00[ASN][1000 genomes]
rs35669118	1.00[ASN][1000 genomes]
rs35822699	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35963991	1.00[ASN][1000 genomes]
rs36043848	1.00[ASN][1000 genomes]
rs4606022	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4840567	1.00[CHB][hapmap]
rs4840570	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841541	1.00[ASN][1000 genomes]
rs4841545	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4841548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841560	1.00[ASN][1000 genomes]
rs4841567	1.00[CHB][hapmap]
rs4841571	1.00[ASN][1000 genomes]
rs56302795	1.00[ASN][1000 genomes]
rs57526558	1.00[ASN][1000 genomes]
rs66617246	1.00[ASN][1000 genomes]
rs67390008	1.00[ASN][1000 genomes]
rs6984115	1.00[ASN][1000 genomes]
rs6999912	1.00[CHB][hapmap]
rs73201420	1.00[ASN][1000 genomes]
rs7464263	1.00[CHB][hapmap]
rs7822109	1.00[CHB][hapmap]
rs7823274	1.00[ASN][1000 genomes]
rs7831369	1.00[ASN][1000 genomes]
rs7831885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs936546	1.00[ASN][1000 genomes]
rs9650624	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11784016	BLK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11353400-11367200	Enhancers	Fetal Thymus	thymus
2	chr8:11357400-11380000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr8:11364200-11367400	Enhancers	Primary B cells from cord blood	blood
4	chr8:11364400-11368800	Enhancers	Dnd41	blood
5	chr8:11364800-11372000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:11365000-11367400	Genic enhancers	GM12878-XiMat	blood
7	chr8:11365200-11368400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:11365400-11367000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:11365400-11368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:11365400-11373400	Enhancers	NHEK	skin
11	chr8:11365600-11372000	Weak transcription	Spleen	Spleen
12	chr8:11365800-11368400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:11365800-11368400	Enhancers	HSMM	muscle
14	chr8:11365800-11374600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:11366000-11371200	Enhancers	Osteobl	bone
16	chr8:11366200-11368200	Enhancers	HSMMtube	muscle
17	chr8:11366200-11368400	Enhancers	NHDF-Ad	bronchial
18	chr8:11366200-11368800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:11366200-11369400	Enhancers	NH-A	brain
20	chr8:11366400-11366800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:11366400-11366800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:11366400-11368400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:11366400-11369400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:11366400-11369400	Enhancers	HMEC	breast
25	chr8:11366600-11366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:11366600-11369400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:11366600-11370000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:11366600-11375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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