Variant report

Variant	rs4841541
Chromosome Location	chr8:11311829-11311830
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11306364..11309144-chr8:11311400..11314118,3	MCF-7	breast:
2	chr8:11306300..11308613-chr8:11308996..11313515,5	K562	blood:
3	chr8:11303373..11305446-chr8:11310341..11312400,2	K562	blood:
4	chr8:11311333..11313794-chr8:11324898..11327371,2	K562	blood:

Variant related genes	Relation type
ENSG00000154319	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11775640	1.00[ASN][1000 genomes]
rs11775779	1.00[ASN][1000 genomes]
rs11776834	1.00[ASN][1000 genomes]
rs11778177	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780432	1.00[ASN][1000 genomes]
rs11780980	1.00[ASN][1000 genomes]
rs11781057	1.00[ASN][1000 genomes]
rs11781400	1.00[ASN][1000 genomes]
rs11784016	1.00[ASN][1000 genomes]
rs11784897	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787413	1.00[ASN][1000 genomes]
rs12156238	1.00[ASN][1000 genomes]
rs13280447	1.00[ASN][1000 genomes]
rs13281992	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13439415	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439487	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409776	1.00[ASN][1000 genomes]
rs2409777	1.00[ASN][1000 genomes]
rs2409779	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485693	1.00[ASN][1000 genomes]
rs28680779	1.00[ASN][1000 genomes]
rs34281672	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34365278	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34443092	1.00[ASN][1000 genomes]
rs34906655	1.00[ASN][1000 genomes]
rs35451013	1.00[ASN][1000 genomes]
rs35619722	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822699	1.00[ASN][1000 genomes]
rs36043848	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4606022	1.00[ASN][1000 genomes]
rs4840570	1.00[ASN][1000 genomes]
rs4841548	1.00[ASN][1000 genomes]
rs4841560	1.00[ASN][1000 genomes]
rs56302795	1.00[ASN][1000 genomes]
rs57526558	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66617246	1.00[ASN][1000 genomes]
rs67390008	1.00[ASN][1000 genomes]
rs6984115	1.00[ASN][1000 genomes]
rs7823274	1.00[ASN][1000 genomes]
rs7831369	1.00[ASN][1000 genomes]
rs7831885	1.00[ASN][1000 genomes]
rs936546	1.00[ASN][1000 genomes]
rs9650624	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv522860	chr8:11253879-11330364	Bivalent/Poised TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv890357	chr8:11286146-11330364	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1030756	chr8:11292073-11332782	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv3443447	chr8:11310642-11315840	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11287800-11313600	Weak transcription	Right Atrium	heart
2	chr8:11292400-11313000	Weak transcription	Pancreas	Pancrea
3	chr8:11296200-11319200	Enhancers	Fetal Thymus	thymus
4	chr8:11303600-11323200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:11305800-11312200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:11306400-11312200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:11307200-11314000	Weak transcription	Fetal Heart	heart
8	chr8:11307200-11322000	Weak transcription	HSMMtube	muscle
9	chr8:11307400-11312000	Weak transcription	Esophagus	oesophagus
10	chr8:11307600-11312400	Weak transcription	Right Ventricle	heart
11	chr8:11307600-11319800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:11307800-11313800	Weak transcription	NHEK	skin
13	chr8:11308000-11312000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:11308200-11313200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:11308200-11313400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:11308400-11314600	Enhancers	Thymus	Thymus
17	chr8:11308600-11314000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr8:11308600-11314800	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:11308800-11313600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:11308800-11316600	Enhancers	Primary T cells from cord blood	blood
21	chr8:11309400-11313800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr8:11309600-11313200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:11309800-11313800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:11310000-11312200	Enhancers	GM12878-XiMat	blood
25	chr8:11310400-11313800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr8:11310400-11316400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:11310600-11314600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:11310800-11316200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr8:11311000-11312200	Weak transcription	Brain Germinal Matrix	brain
30	chr8:11311000-11313600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:11311000-11313800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:11311200-11313800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr8:11311200-11316200	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr8:11311200-11317000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr8:11311200-11317200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:11311400-11313800	Enhancers	A549	lung
37	chr8:11311400-11315200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:11311600-11312000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr8:11311600-11312200	Enhancers	Fetal Brain Female	brain
40	chr8:11311600-11312800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr8:11311600-11312800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:11311600-11313000	Enhancers	Primary B cells from cord blood	blood
43	chr8:11311600-11314000	Enhancers	Fetal Brain Male	brain
44	chr8:11311600-11314200	Enhancers	Brain Cingulate Gyrus	brain
45	chr8:11311600-11314800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr8:11311600-11316600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr8:11311800-11312000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:11311800-11312200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr8:11311800-11312400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr8:11311800-11312600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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