Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10093516	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10095182	0.92[GIH][hapmap]
rs10435613	0.95[ASN][1000 genomes]
rs10435614	0.95[ASN][1000 genomes]
rs10957373	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12265	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs12547055	0.81[CHB][hapmap]
rs12674507	0.86[ASN][1000 genomes]
rs12675850	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs13278628	0.95[ASN][1000 genomes]
rs13282925	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2555580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28532882	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34469344	0.97[ASN][1000 genomes]
rs34556813	0.85[ASN][1000 genomes]
rs35150383	0.95[ASN][1000 genomes]
rs35502468	0.90[ASN][1000 genomes]
rs35769205	0.85[ASN][1000 genomes]
rs35929661	0.86[ASN][1000 genomes]
rs3739336	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3824263	0.83[CHB][hapmap]
rs6472275	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6651308	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs66815352	0.86[ASN][1000 genomes]
rs6991180	0.86[ASN][1000 genomes]
rs8180970	0.97[ASN][1000 genomes]
rs9643398	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs9643582	0.83[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11784121	SYNGR2	trans	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67291000-67304000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67293000-67298400	Enhancers	Fetal Heart	heart
3	chr8:67293000-67300200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:67293600-67297200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:67295800-67299000	Weak transcription	Placenta	Placenta
6	chr8:67295800-67299600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:67295800-67300200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:67295800-67301000	Weak transcription	Right Atrium	heart
9	chr8:67296600-67297800	Enhancers	Fetal Brain Female	brain
10	chr8:67296600-67298000	Enhancers	Brain Germinal Matrix	brain
11	chr8:67296600-67298200	Enhancers	Primary T cells from cord blood	blood
12	chr8:67296600-67298200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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