Variant report

Variant	rs10957373
Chromosome Location	chr8:67329108-67329109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10092151	0.80[EUR][1000 genomes]
rs10093516	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10095182	0.96[GIH][hapmap];0.82[EUR][1000 genomes]
rs10435613	0.88[ASN][1000 genomes]
rs10435614	0.88[ASN][1000 genomes]
rs11784121	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11784186	0.80[EUR][1000 genomes]
rs12265	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs12541243	0.87[ASN][1000 genomes]
rs12547055	0.81[CHB][hapmap]
rs12674507	0.97[ASN][1000 genomes]
rs12675850	1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs13259712	0.87[ASN][1000 genomes]
rs13278628	0.88[ASN][1000 genomes]
rs13282925	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1473817	0.80[EUR][1000 genomes]
rs2555580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28532882	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34469344	0.86[ASN][1000 genomes]
rs35150383	0.84[ASN][1000 genomes]
rs35502468	0.92[ASN][1000 genomes]
rs35929661	0.97[ASN][1000 genomes]
rs3739336	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3824263	0.83[CHB][hapmap]
rs6472275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6651308	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs66815352	0.97[ASN][1000 genomes]
rs6991180	0.97[ASN][1000 genomes]
rs8180970	0.86[ASN][1000 genomes]
rs9643398	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs9643582	0.83[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67317400-67330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67319800-67330400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:67327200-67329400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:67327400-67329200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:67327400-67330000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:67327400-67330400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:67328000-67330400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:67328000-67330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:67328000-67330400	Weak transcription	NHDF-Ad	bronchial
10	chr8:67328000-67333400	Weak transcription	Osteobl	bone
11	chr8:67329000-67330800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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