Variant report

Variant	rs10092151
Chromosome Location	chr8:67317962-67317963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67310457..67313405-chr8:67317320..67319521,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10095182	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095818	1.00[ASN][1000 genomes]
rs10099908	1.00[ASN][1000 genomes]
rs10100008	1.00[ASN][1000 genomes]
rs10108841	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112574	0.93[CEU][hapmap]
rs10113313	1.00[ASN][1000 genomes]
rs1030420	0.93[CEU][hapmap]
rs10957373	0.80[EUR][1000 genomes]
rs11782087	1.00[ASN][1000 genomes]
rs11784186	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984980	1.00[ASN][1000 genomes]
rs13282925	0.83[EUR][1000 genomes]
rs1426905	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473817	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932829	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17320665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322654	1.00[ASN][1000 genomes]
rs1863639	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28377354	1.00[ASN][1000 genomes]
rs28497070	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505853	1.00[ASN][1000 genomes]
rs28532882	0.81[EUR][1000 genomes]
rs28609784	1.00[ASN][1000 genomes]
rs28664134	1.00[ASN][1000 genomes]
rs4291250	1.00[ASN][1000 genomes]
rs4448262	1.00[ASN][1000 genomes]
rs60798600	1.00[ASN][1000 genomes]
rs6472275	0.84[EUR][1000 genomes]
rs7006908	1.00[ASN][1000 genomes]
rs7014980	0.93[CEU][hapmap]
rs73691530	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10092151	C8orf46	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67301800-67319800	Weak transcription	Aorta	Aorta
2	chr8:67307400-67320000	Weak transcription	Liver	Liver
3	chr8:67311400-67318600	Weak transcription	Gastric	stomach
4	chr8:67315000-67319200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:67315400-67318600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:67317400-67318400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:67317400-67318400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:67317400-67318400	Weak transcription	Psoas Muscle	Psoas
9	chr8:67317400-67318600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:67317400-67318600	Weak transcription	Ovary	ovary
11	chr8:67317400-67330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:67317600-67318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:67317600-67318600	Weak transcription	Placenta	Placenta
14	chr8:67317600-67318600	Weak transcription	Left Ventricle	heart
15	chr8:67317600-67319600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:67317600-67319800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:67317800-67318200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:67317800-67318200	Weak transcription	Right Atrium	heart
19	chr8:67317800-67318600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:67317800-67318600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:67317800-67318800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:67317800-67319000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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