Variant report

Variant	rs11784259
Chromosome Location	chr8:87216600-87216601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87149425..87151033-chr8:87215624..87217848,2	MCF-7	breast:
2	chr8:87215309..87218068-chr8:87366411..87367978,2	MCF-7	breast:
3	chr8:87214685..87217092-chr8:87228293..87229889,2	MCF-7	breast:
4	chr8:87209540..87217164-chr8:87352654..87357387,21	MCF-7	breast:
5	chr8:87213959..87216666-chr8:87241758..87244737,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164893	Chromatin interaction
ENSG00000254231	Chromatin interaction
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10504820	0.81[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs10504821	0.87[JPT][hapmap]
rs10808539	0.87[JPT][hapmap]
rs10956194	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs10956501	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11775375	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12549677	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12550469	0.83[CEU][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12677686	0.81[JPT][hapmap]
rs1483779	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs17605526	0.85[CEU][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1872136	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs2128930	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2466326	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2626324	0.87[JPT][hapmap];1.00[MEX][hapmap]
rs2626326	0.87[JPT][hapmap];1.00[MEX][hapmap]
rs2626327	0.87[JPT][hapmap]
rs2626328	0.87[JPT][hapmap]
rs2626329	0.87[JPT][hapmap];1.00[MEX][hapmap]
rs2626331	0.87[JPT][hapmap]
rs2626332	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs2626339	0.85[JPT][hapmap]
rs2626340	0.87[JPT][hapmap]
rs2626342	0.87[JPT][hapmap]
rs2626345	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2721244	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2721249	0.87[JPT][hapmap]
rs2721250	0.87[JPT][hapmap]
rs2721251	0.87[JPT][hapmap]
rs2721253	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2721256	0.87[JPT][hapmap]
rs2721257	0.81[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2721260	0.87[JPT][hapmap]
rs34092348	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34425683	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34440851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278130	0.86[EUR][1000 genomes]
rs4584126	0.87[JPT][hapmap]
rs6469859	0.81[JPT][hapmap]
rs6470734	0.85[CEU][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6981293	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981608	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6981984	0.85[CEU][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6983781	0.87[JPT][hapmap]
rs6992915	0.87[JPT][hapmap]
rs6994457	0.81[JPT][hapmap];0.80[MEX][hapmap]
rs7005074	0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs71525038	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71525039	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7820770	0.87[JPT][hapmap]
rs7845147	0.81[JPT][hapmap]
rs953147	0.87[JPT][hapmap];1.00[MEX][hapmap]
rs953148	0.87[JPT][hapmap];0.95[MEX][hapmap]
rs9656982	0.81[CHD][hapmap];0.80[MEX][hapmap]
rs975818	0.87[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1020485	chr8:87167184-87330873	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1023114	chr8:87167184-87335197	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1033960	chr8:87167790-87334194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1016050	chr8:87167790-87335197	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv6290	chr8:87175740-87229808	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1016177	chr8:87177368-87319476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1023772	chr8:87177368-87334194	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1031874	chr8:87177368-87335197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1030401	chr8:87177368-87337260	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1033007	chr8:87185458-87319476	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	esv2761445	chr8:87185470-87335197	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
20	nsv465733	chr8:87187050-87302328	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv611675	chr8:87187050-87302328	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv519507	chr8:87187195-87333968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1020459	chr8:87200116-87330912	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv539660	chr8:87200116-87330912	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
25	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
26	esv2752341	chr8:87205384-87245084	Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv611708	chr8:87205885-87333968	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
28	nsv1021125	chr8:87208343-87331289	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
29	nsv539661	chr8:87208343-87331289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87213800-87216600	Weak transcription	Ovary	ovary
2	chr8:87214600-87216600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:87216400-87217200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:87216600-87216800	Bivalent Enhancer	HepG2	liver
5	chr8:87216600-87217000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:87216600-87217000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:87216600-87217200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:87216600-87217600	Enhancers	Ovary	ovary
9	chr8:87216600-87217800	Enhancers	H1 Cell Line	embryonic stem cell

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