Variant report

Variant	rs11785204
Chromosome Location	chr8:99271583-99271584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99256959..99259667-chr8:99271247..99273915,3	MCF-7	breast:
2	chr8:99270377..99272371-chr8:99344599..99346284,2	MCF-7	breast:
3	chr8:99270866..99273832-chr8:99304414..99306479,5	MCF-7	breast:
4	chr8:99258977..99261249-chr8:99270985..99273813,2	MCF-7	breast:
5	chr8:99271141..99273979-chr8:99304755..99308094,7	MCF-7	breast:
6	chr8:99267147..99269398-chr8:99270200..99273584,3	MCF-7	breast:
7	chr8:99270989..99273601-chr8:99316752..99319337,2	MCF-7	breast:
8	chr8:99178658..99180420-chr8:99270653..99273641,2	MCF-7	breast:
9	chr8:99253235..99256078-chr8:99270762..99273176,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10105510	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10283149	0.85[ASN][1000 genomes]
rs11785107	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12674900	0.99[ASN][1000 genomes]
rs2290293	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99240600-99294200	Weak transcription	Ovary	ovary
2	chr8:99253400-99273200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:99255600-99272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:99255600-99272000	Weak transcription	NHEK	skin
5	chr8:99255800-99271800	Weak transcription	HMEC	breast
6	chr8:99258600-99272000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:99259200-99272400	Weak transcription	Colonic Mucosa	Colon
8	chr8:99259800-99273000	Weak transcription	Pancreas	Pancrea
9	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:99261000-99273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:99261400-99272200	Weak transcription	Fetal Lung	lung
12	chr8:99262000-99271800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:99264800-99271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:99264800-99271600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:99264800-99271800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:99264800-99271800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:99265000-99271800	Weak transcription	Esophagus	oesophagus
18	chr8:99265400-99298400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:99265400-99304200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:99267200-99271800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:99267200-99271800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:99269200-99272000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:99269400-99271800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:99271200-99271800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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