Variant report

Variant	rs12674900
Chromosome Location	chr8:99289863-99289864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10283149	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11785107	0.95[ASN][1000 genomes]
rs11785204	0.99[ASN][1000 genomes]
rs2290293	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99240600-99294200	Weak transcription	Ovary	ovary
2	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:99265400-99298400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:99265400-99304200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:99284600-99304600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:99284800-99304600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:99287600-99305000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:99287800-99303600	Weak transcription	Fetal Stomach	stomach
9	chr8:99289000-99292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:99289000-99297800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:99289000-99303400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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