Variant report

Variant	rs11785516
Chromosome Location	chr8:69553189-69553190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69552027..69553866-chr8:69558077..69560786,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10087440	0.87[ASN][1000 genomes]
rs10100961	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11783166	0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1434926	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1434927	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1434932	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1434934	0.89[CEU][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1529830	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2164197	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34419520	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6472414	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6472415	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67671284	0.84[ASN][1000 genomes]
rs6989204	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7812930	0.88[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890984	chr8:69482825-69556111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69551400-69555000	Weak transcription	HSMMtube	muscle
3	chr8:69551600-69554200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:69551600-69554600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:69552000-69553200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr8:69552000-69553800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:69552000-69554000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:69552000-69554200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:69552200-69553400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:69552200-69553600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:69552200-69554200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:69552600-69553200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:69552600-69553200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:69552600-69553600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:69552600-69553800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:69552800-69553200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:69552800-69553200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:69552800-69553400	Enhancers	Osteobl	bone
19	chr8:69552800-69553600	Enhancers	Fetal Brain Male	brain
20	chr8:69552800-69553600	Enhancers	NH-A	brain
21	chr8:69552800-69553800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr8:69552800-69554200	Enhancers	Fetal Lung	lung
23	chr8:69553000-69553200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr8:69553000-69553200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:69553000-69553600	Enhancers	Fetal Stomach	stomach
26	chr8:69553000-69553800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:69553000-69553800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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