Variant report

Variant	rs1434934
Chromosome Location	chr8:69575524-69575525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10087440	0.92[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10100961	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs11785516	0.89[CEU][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13258211	0.93[ASN][1000 genomes]
rs1434926	0.90[EUR][1000 genomes]
rs1434927	0.87[ASW][hapmap];0.89[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs1434932	0.85[CEU][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1529830	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2164197	0.84[ASN][1000 genomes]
rs34419520	0.91[EUR][1000 genomes]
rs6472414	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6472415	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989204	0.87[ASW][hapmap];0.89[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7812930	0.84[CEU][hapmap];0.82[GIH][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1434934	C8orf44	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69569800-69575800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:69574800-69579600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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