Variant report

Variant	rs11785708
Chromosome Location	chr8:39491101-39491102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10088799	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090933	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10099250	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10106405	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10107204	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108019	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10108123	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10108138	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10110653	0.87[ASN][1000 genomes]
rs10958558	0.83[YRI][hapmap]
rs11777357	0.88[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap]
rs11985352	0.83[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11988623	0.95[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs11990538	0.83[YRI][hapmap]
rs11991456	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12548363	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12550405	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679668	0.85[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs13248954	0.95[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs13258794	0.87[YRI][hapmap]
rs13260129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs13276944	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs13277716	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1349545	0.87[ASN][1000 genomes]
rs1349547	0.88[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1376720	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs1376725	0.94[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs1376726	0.88[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1993120	0.90[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs2060802	1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2305392	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2350466	0.87[ASN][1000 genomes]
rs28730314	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34312123	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35739681	0.88[ASN][1000 genomes]
rs3735880	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3824144	0.93[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs4297011	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4376471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4584120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4734001	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs62511904	0.87[ASN][1000 genomes]
rs62511905	0.87[ASN][1000 genomes]
rs6474161	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap]
rs6474162	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6980957	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6988389	0.92[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs72641297	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7820447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7831283	0.87[ASN][1000 genomes]
rs7837204	0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap]
rs7838350	0.88[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs9298571	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[ASN][1000 genomes]
rs9643868	0.92[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs9657175	0.88[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2759608	chr8:39174279-39597639	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv890725	chr8:39212435-39587864	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2829895	chr8:39224968-39507869	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758154	chr8:39245798-39597639	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1021340	chr8:39268667-39577905	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv890829	chr8:39378400-39522613	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv890830	chr8:39378400-39575853	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv890832	chr8:39405337-39522613	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv890833	chr8:39405337-39664696	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv611086	chr8:39408586-39522613	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv890834	chr8:39429071-39586358	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv890835	chr8:39439518-39522613	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv890836	chr8:39480366-39650940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11785708	C8orf4	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links