Variant report

Variant	rs11787217
Chromosome Location	chr8:11505735-11505736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GATA4-1	chr8:11504845-11506826	NONHSAT125069

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10108511	1.00[CHB][hapmap]
rs1042701	1.00[CHB][hapmap]
rs11250146	1.00[CHB][hapmap]
rs11776834	1.00[CHB][hapmap]
rs11777273	1.00[CHB][hapmap]
rs11781400	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11784016	1.00[CHB][hapmap]
rs11786272	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787286	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293300	1.00[CHB][hapmap]
rs13254568	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272061	1.00[CHB][hapmap]
rs13280055	1.00[ASN][1000 genomes]
rs13439415	1.00[CHB][hapmap]
rs1382567	1.00[CHB][hapmap]
rs1478890	1.00[CHB][hapmap]
rs1692811	1.00[CHB][hapmap]
rs1692821	1.00[CHB][hapmap]
rs1736081	1.00[CHB][hapmap]
rs1736086	1.00[CHB][hapmap]
rs17744726	1.00[CHB][hapmap]
rs17807523	1.00[ASN][1000 genomes]
rs2127127	1.00[CHB][hapmap]
rs2169888	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245232	1.00[CHB][hapmap]
rs2251937	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264306	1.00[CHB][hapmap]
rs2264866	1.00[CHB][hapmap]
rs2409784	1.00[CHB][hapmap]
rs2409798	1.00[CHB][hapmap]
rs2618434	1.00[CHB][hapmap]
rs2736342	1.00[CHB][hapmap]
rs2740592	1.00[CHB][hapmap]
rs35620480	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35669118	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822699	1.00[ASN][1000 genomes]
rs35963991	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3947	1.00[CHB][hapmap]
rs4320509	1.00[ASN][1000 genomes]
rs4606022	1.00[CHB][hapmap]
rs4839	1.00[CHB][hapmap]
rs4840567	1.00[CHB][hapmap]
rs4840570	1.00[ASN][1000 genomes]
rs4840581	1.00[CHB][hapmap]
rs4841545	1.00[CHB][hapmap]
rs4841548	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841560	1.00[ASN][1000 genomes]
rs4841567	1.00[CHB][hapmap]
rs4841571	1.00[ASN][1000 genomes]
rs66617246	1.00[ASN][1000 genomes]
rs6999912	1.00[CHB][hapmap]
rs7010648	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs709821	1.00[CHB][hapmap]
rs709822	1.00[CHB][hapmap]
rs73201420	1.00[ASN][1000 genomes]
rs7464263	1.00[CHB][hapmap]
rs7822109	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv968504	chr8:11503821-11515422	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11502400-11509000	Weak transcription	Gastric	stomach
2	chr8:11502400-11515400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:11503600-11509400	Weak transcription	Right Atrium	heart
4	chr8:11505600-11506000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:11505600-11508400	Weak transcription	Primary B cells from peripheral blood	blood

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