Variant report

Variant	rs11788056
Chromosome Location	chr9:14536228-14536229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14531418..14533504-chr9:14535462..14537860,3	K562	blood:
2	chr9:14534376..14536312-chr9:14538392..14540360,2	K562	blood:
3	chr9:14532036..14533949-chr9:14535107..14537030,2	K562	blood:
4	chr9:14526916..14528634-chr9:14534526..14536593,2	K562	blood:

Variant related genes	Relation type
ENSG00000237137	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11787815	1.00[ASN][1000 genomes]
rs11789042	1.00[AFR][1000 genomes]
rs11790649	1.00[ASN][1000 genomes]
rs11793517	1.00[AFR][1000 genomes]
rs11793843	1.00[AFR][1000 genomes]
rs11795087	1.00[AFR][1000 genomes]
rs16931893	1.00[ASN][1000 genomes]
rs56237396	1.00[ASN][1000 genomes]
rs57866508	1.00[ASN][1000 genomes]
rs7020007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700551	1.00[ASN][1000 genomes]
rs72700579	1.00[ASN][1000 genomes]
rs72700586	1.00[ASN][1000 genomes]
rs72702930	1.00[ASN][1000 genomes]
rs72702932	1.00[ASN][1000 genomes]
rs72702938	1.00[ASN][1000 genomes]
rs72702939	1.00[ASN][1000 genomes]
rs72702940	1.00[ASN][1000 genomes]
rs72702941	1.00[ASN][1000 genomes]
rs72702954	1.00[ASN][1000 genomes]
rs72702957	1.00[ASN][1000 genomes]
rs72702961	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702962	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702994	1.00[AFR][1000 genomes]
rs72702995	1.00[AFR][1000 genomes]
rs72702999	1.00[AFR][1000 genomes]
rs72704924	1.00[AFR][1000 genomes]
rs72704939	1.00[AFR][1000 genomes]
rs72704952	1.00[AFR][1000 genomes]
rs963338	1.00[ASN][1000 genomes]
rs979897	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892604	chr9:14519301-14559910	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14532200-14538400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:14532800-14541200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:14534400-14538400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:14534600-14541200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:14534800-14537600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:14534800-14541200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:14535000-14536600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:14535000-14537000	Weak transcription	K562	blood
9	chr9:14535000-14538400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:14535000-14538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:14535400-14541200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:14535400-14541200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:14535400-14541600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:14535400-14542200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:14535600-14536600	Enhancers	Fetal Heart	heart
16	chr9:14536200-14537200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:14536200-14537400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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