Variant report

Variant	rs979897
Chromosome Location	chr9:14434544-14434545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14434018..14435648-chr9:14439708..14442035,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11787815	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788056	1.00[ASN][1000 genomes]
rs11790649	1.00[ASN][1000 genomes]
rs11790783	0.93[EUR][1000 genomes]
rs11794641	0.83[EUR][1000 genomes]
rs1323340	0.86[EUR][1000 genomes]
rs16931893	1.00[ASN][1000 genomes]
rs55769910	0.93[EUR][1000 genomes]
rs56237396	1.00[ASN][1000 genomes]
rs57866508	1.00[ASN][1000 genomes]
rs7020007	1.00[ASN][1000 genomes]
rs72700551	1.00[ASN][1000 genomes]
rs72700579	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700586	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700590	0.86[EUR][1000 genomes]
rs72702930	1.00[ASN][1000 genomes]
rs72702932	1.00[ASN][1000 genomes]
rs72702938	1.00[ASN][1000 genomes]
rs72702939	1.00[ASN][1000 genomes]
rs72702940	1.00[ASN][1000 genomes]
rs72702941	1.00[ASN][1000 genomes]
rs72702954	1.00[ASN][1000 genomes]
rs72702957	1.00[ASN][1000 genomes]
rs72702961	1.00[ASN][1000 genomes]
rs72702962	1.00[ASN][1000 genomes]
rs963338	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14425600-14434800	Weak transcription	Left Ventricle	heart
2	chr9:14429200-14436000	Weak transcription	Psoas Muscle	Psoas
3	chr9:14429400-14435000	Weak transcription	Right Ventricle	heart
4	chr9:14432200-14437400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:14432400-14435000	Enhancers	Fetal Heart	heart
6	chr9:14433200-14435400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:14433400-14434600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:14433400-14434600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:14433400-14436600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:14433600-14437400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:14433800-14435000	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:14433800-14435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:14433800-14436200	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:14433800-14436600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:14433800-14437000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:14433800-14437200	Weak transcription	Brain Substantia Nigra	brain
17	chr9:14433800-14437200	Weak transcription	Fetal Kidney	kidney
18	chr9:14433800-14437600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:14434000-14434600	Enhancers	K562	blood
20	chr9:14434000-14434800	Enhancers	HUVEC	blood vessel
21	chr9:14434000-14436000	Weak transcription	Aorta	Aorta
22	chr9:14434000-14436000	Weak transcription	Right Atrium	heart
23	chr9:14434000-14436800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:14434000-14437000	Weak transcription	Fetal Brain Male	brain
25	chr9:14434000-14437400	Weak transcription	Fetal Stomach	stomach
26	chr9:14434000-14437600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:14434200-14434600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:14434200-14435000	Enhancers	Fetal Brain Female	brain
29	chr9:14434200-14435000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:14434200-14437000	Weak transcription	Brain Germinal Matrix	brain
31	chr9:14434400-14437000	Weak transcription	Fetal Lung	lung
32	chr9:14434400-14437400	Weak transcription	Brain Anterior Caudate	brain
33	chr9:14434400-14437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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