Variant report

Variant	rs11794641
Chromosome Location	chrY:16674854-16674855
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11787815	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323340	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700579	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72700586	0.93[EUR][1000 genomes]
rs72700590	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979897	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409548	chrY:16169870-17053457	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:16652800-16687600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrY:16652800-16724800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrY:16656000-16681200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrY:16656200-16681200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chrY:16672800-16718000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chrY:16674400-16687800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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