Variant report

Variant	rs11788120
Chromosome Location	chr9:95748274-95748275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95739197..95741391-chr9:95747258..95749743,2	MCF-7	breast:
2	chr9:95735773..95738938-chr9:95746079..95753670,13	MCF-7	breast:
3	chr9:95746898..95754225-chr9:95890814..95897960,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10121856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10283714	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739940	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821048	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821049	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821050	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821051	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992561	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992564	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802381	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4302906	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744159	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4744161	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7030160	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032953	0.82[EUR][1000 genomes]
rs7847879	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848528	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7867742	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7869056	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7869421	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7870077	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7875497	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9942903	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942965	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95735400-95752600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
2	chr9:95740000-95754800	Weak transcription	Gastric	stomach
3	chr9:95740000-95754800	Weak transcription	Pancreas	Pancrea
4	chr9:95740200-95750000	Weak transcription	Esophagus	oesophagus
5	chr9:95740200-95750600	Weak transcription	Lung	lung
6	chr9:95744400-95751400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr9:95744600-95749200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr9:95745800-95749800	Strong transcription	Fetal Thymus	thymus
9	chr9:95745800-95753200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr9:95746200-95751400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:95746400-95751000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:95746400-95752600	Genic enhancers	Primary T cells from cord blood	blood
13	chr9:95746600-95750000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:95746600-95750200	Strong transcription	Primary hematopoietic stem cells	blood
15	chr9:95746600-95752000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:95746800-95748800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:95747000-95752200	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr9:95747200-95748600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:95747200-95750600	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr9:95747200-95752600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:95747400-95749000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:95747400-95749000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:95747600-95748800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:95747600-95750400	Strong transcription	Primary B cells from cord blood	blood
25	chr9:95747600-95750400	Weak transcription	GM12878-XiMat	blood
26	chr9:95747600-95751400	Strong transcription	Dnd41	blood
27	chr9:95747800-95754600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:95748000-95750600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:95748200-95748400	Strong transcription	Thymus	Thymus
30	chr9:95748200-95749200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
31	chr9:95748200-95749200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:95748200-95749200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:95748200-95756000	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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