Variant report

Variant	rs4744159
Chromosome Location	chr9:95733962-95733963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95731583..95735118-chr9:95737800..95740218,3	K562	blood:
2	chr9:95733267..95735164-chr9:95893789..95896745,2	MCF-7	breast:
3	chr9:95733025..95737240-chr9:95894074..95898257,5	MCF-7	breast:
4	chr9:95637654..95640681-chr9:95731798..95734856,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction
ENSG00000127081	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10121856	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10283714	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10739940	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821048	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821049	0.87[EUR][1000 genomes]
rs10821050	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10821051	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10992561	0.88[EUR][1000 genomes]
rs10992564	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11788120	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3802381	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4302906	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7030160	0.88[EUR][1000 genomes]
rs7847879	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7848528	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7867742	0.87[EUR][1000 genomes]
rs7869056	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7869421	0.87[EUR][1000 genomes]
rs7870077	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7875497	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9942903	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9942965	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr9:95728200-95739600	Weak transcription	Fetal Stomach	stomach
3	chr9:95728800-95739400	Weak transcription	Gastric	stomach
4	chr9:95728800-95739600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:95728800-95740600	Weak transcription	Small Intestine	intestine
6	chr9:95729000-95734000	Genic enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:95729000-95735000	Weak transcription	Adipose Nuclei	Adipose
8	chr9:95729000-95739400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:95729000-95741400	Weak transcription	Right Ventricle	heart
10	chr9:95729200-95734000	Genic enhancers	Fetal Thymus	thymus
11	chr9:95729200-95739200	Weak transcription	Colonic Mucosa	Colon
12	chr9:95729600-95734200	Genic enhancers	Primary B cells from cord blood	blood
13	chr9:95731000-95734000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:95731000-95734200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:95731200-95734000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:95731200-95735000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:95731400-95734000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:95731400-95734200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:95731400-95735400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:95731600-95736800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:95731800-95734200	Enhancers	Lung	lung
22	chr9:95732000-95734200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:95732000-95741200	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:95732800-95737400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:95733000-95735000	Weak transcription	Placenta	Placenta
26	chr9:95733000-95736200	Weak transcription	NHEK	skin
27	chr9:95733200-95734800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:95733200-95735600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:95733200-95735800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:95733200-95735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:95733200-95736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:95733200-95736600	Weak transcription	HMEC	breast
33	chr9:95733200-95736800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:95733200-95736800	Weak transcription	Spleen	Spleen
35	chr9:95733400-95735400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr9:95733400-95737200	Weak transcription	Brain Germinal Matrix	brain
37	chr9:95733400-95741400	Weak transcription	Fetal Brain Female	brain
38	chr9:95733400-95742000	Weak transcription	Fetal Brain Male	brain
39	chr9:95733600-95734000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr9:95733600-95734000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr9:95733600-95734600	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr9:95733600-95734800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr9:95733600-95734800	Weak transcription	GM12878-XiMat	blood
44	chr9:95733600-95735800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:95733600-95735800	Weak transcription	Pancreas	Pancrea
46	chr9:95733600-95736800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:95733600-95736800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr9:95733600-95736800	Weak transcription	Fetal Lung	lung
49	chr9:95733600-95738000	Weak transcription	Esophagus	oesophagus
50	chr9:95733800-95734000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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