Variant report
| Variant | rs11789670 |
|---|---|
| Chromosome Location | chr9:86219607-86219608 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1044214 | 1.00[CHB][hapmap] |
| rs1052690 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap] |
| rs11790364 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11792478 | 1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs17421460 | 1.00[ASW][hapmap] |
| rs2780970 | 1.00[CHB][hapmap] |
| rs2780971 | 1.00[CHB][hapmap] |
| rs2780974 | 1.00[CHB][hapmap] |
| rs2780976 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap] |
| rs2780980 | 1.00[CHB][hapmap] |
| rs2781002 | 1.00[CHB][hapmap] |
| rs2781006 | 1.00[CHB][hapmap] |
| rs2781007 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap] |
| rs2781008 | 1.00[CHB][hapmap] |
| rs2811907 | 1.00[CHB][hapmap] |
| rs2811908 | 1.00[CHB][hapmap] |
| rs2811910 | 1.00[CHB][hapmap] |
| rs2811911 | 1.00[CHB][hapmap] |
| rs2811913 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap] |
| rs2811914 | 1.00[CHB][hapmap] |
| rs2811915 | 1.00[CHB][hapmap] |
| rs2811917 | 1.00[CHB][hapmap] |
| rs2811918 | 1.00[CHB][hapmap] |
| rs9410586 | 1.00[CHB][hapmap] |
| rs9410882 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893512 | chr9:86022215-86323309 | Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | esv2762820 | chr9:86214615-86220040 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11789670 | AGTPBP1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:86214800-86223400 | Weak transcription | HepG2 | liver |
| 2 | chr9:86216200-86237400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
