Variant report

Variant	rs11789735
Chromosome Location	chr9:18347388-18347389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11790578	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11790709	1.00[AFR][1000 genomes]
rs11792115	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11792893	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11793521	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11999378	0.86[EUR][1000 genomes]
rs13286935	1.00[AFR][1000 genomes]
rs1411153	0.93[CEU][hapmap]
rs17201892	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17202079	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17202635	0.94[CEU][hapmap]
rs17791003	0.94[EUR][1000 genomes]
rs17791761	0.94[CEU][hapmap]
rs4129608	0.83[EUR][1000 genomes]
rs4351499	0.93[EUR][1000 genomes]
rs4366171	0.90[EUR][1000 genomes]
rs4514085	0.90[EUR][1000 genomes]
rs4629974	0.90[EUR][1000 genomes]
rs55802908	0.90[EUR][1000 genomes]
rs56030218	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56067157	0.80[EUR][1000 genomes]
rs56139132	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72686842	0.80[EUR][1000 genomes]
rs72686857	0.90[EUR][1000 genomes]
rs7858392	0.83[EUR][1000 genomes]
rs950193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv525743	chr9:18312578-18359014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18333400-18368200	Weak transcription	Aorta	Aorta
2	chr9:18344000-18347600	Weak transcription	NHDF-Ad	bronchial
3	chr9:18344200-18347400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:18344200-18347600	Weak transcription	Liver	Liver
5	chr9:18344200-18347600	Weak transcription	Osteobl	bone
6	chr9:18344600-18347400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:18345000-18347600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:18346400-18347800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:18346400-18348800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:18346600-18348400	Enhancers	Fetal Heart	heart
11	chr9:18346600-18362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:18346800-18347600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:18346800-18348400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:18346800-18348400	Enhancers	HSMM	muscle
15	chr9:18346800-18351800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:18347000-18347400	Weak transcription	Brain Substantia Nigra	brain
17	chr9:18347000-18348200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:18347000-18348400	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:18347200-18348200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:18347200-18348800	Enhancers	Brain Hippocampus Middle	brain

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