Variant report

Variant	rs11792893
Chromosome Location	chr9:18333842-18333843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511651	1.00[AFR][1000 genomes]
rs11789735	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11790578	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11792115	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793521	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11999378	0.88[EUR][1000 genomes]
rs1411153	0.93[CEU][hapmap]
rs17201892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17202079	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17202635	0.94[CEU][hapmap];1.00[AFR][1000 genomes]
rs17202704	1.00[AFR][1000 genomes]
rs17791003	0.94[EUR][1000 genomes]
rs17791761	0.94[CEU][hapmap];1.00[AFR][1000 genomes]
rs17792334	1.00[AFR][1000 genomes]
rs17792405	1.00[AFR][1000 genomes]
rs17792440	1.00[AFR][1000 genomes]
rs2226018	1.00[AFR][1000 genomes]
rs4129608	0.83[EUR][1000 genomes]
rs4351499	0.93[EUR][1000 genomes]
rs4366171	0.90[EUR][1000 genomes]
rs4514085	0.90[EUR][1000 genomes]
rs4629974	0.90[EUR][1000 genomes]
rs55802908	0.90[EUR][1000 genomes]
rs56030218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56067157	0.82[EUR][1000 genomes]
rs56139132	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72686842	0.82[EUR][1000 genomes]
rs72686857	0.92[EUR][1000 genomes]
rs7858392	0.83[EUR][1000 genomes]
rs950193	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv430001	chr9:18301116-18346392	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv525743	chr9:18312578-18359014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18325600-18334200	Weak transcription	Fetal Heart	heart
2	chr9:18331000-18334400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:18331600-18336000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:18331800-18337000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:18332000-18334000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:18332000-18334400	Enhancers	HUVEC	blood vessel
7	chr9:18332200-18337800	Weak transcription	Osteobl	bone
8	chr9:18332400-18334000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr9:18332600-18335400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:18332600-18337000	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:18332600-18337600	Weak transcription	NH-A	brain
12	chr9:18332800-18334000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:18332800-18334200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:18333000-18334000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:18333000-18334400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:18333400-18334600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:18333400-18368200	Weak transcription	Aorta	Aorta
18	chr9:18333800-18334000	Flanking Active TSS	NHDF-Ad	bronchial
19	chr9:18333800-18334200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:18333800-18334200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:18333800-18334200	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:18333800-18335000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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