Variant report

Variant	rs11790111
Chromosome Location	chr9:95997543-95997544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10992685	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992686	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992691	0.87[AFR][1000 genomes]
rs11788911	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683147	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34795796	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56154239	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7029773	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7031132	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7032194	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7041398	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7048527	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7865467	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9696691	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893583	chr9:95996573-96091688	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95984800-95998000	Enhancers	Pancreas	Pancrea
2	chr9:95986200-96006800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95987200-96000200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95987400-96001000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:95987400-96005200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:95988200-96006800	Weak transcription	Esophagus	oesophagus
7	chr9:95988400-95999800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:95992200-95999800	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:95993600-95997600	Weak transcription	Fetal Lung	lung
10	chr9:95993600-96005000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:95993800-96001800	Weak transcription	Spleen	Spleen
12	chr9:95994000-96001000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:95994600-95997600	Weak transcription	Gastric	stomach
14	chr9:95995200-96000600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:95995200-96026400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:95995400-95997800	Strong transcription	Fetal Intestine Small	intestine
17	chr9:95995600-96030600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:95996200-95998000	Strong transcription	Fetal Intestine Large	intestine
19	chr9:95996200-95999200	Enhancers	Stomach Mucosa	stomach
20	chr9:95996200-95999400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:95996200-96001200	Genic enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:95996400-95998800	Genic enhancers	Rectal Mucosa Donor 29	rectum
23	chr9:95996400-95999000	Enhancers	Fetal Muscle Leg	muscle
24	chr9:95996400-95999200	Genic enhancers	Duodenum Mucosa	Duodenum
25	chr9:95996400-95999400	Enhancers	Placenta	Placenta
26	chr9:95996400-96004400	Strong transcription	Fetal Brain Female	brain
27	chr9:95996400-96011200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr9:95996600-95997600	Enhancers	Psoas Muscle	Psoas
29	chr9:95996600-95998600	Weak transcription	Small Intestine	intestine
30	chr9:95996600-95999400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr9:95996800-95997800	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:95996800-95999200	Genic enhancers	Colonic Mucosa	Colon
33	chr9:95996800-95999600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:95997000-95998000	Weak transcription	Left Ventricle	heart
35	chr9:95997000-95998200	Enhancers	Brain Cingulate Gyrus	brain
36	chr9:95997000-95999000	Bivalent Enhancer	Fetal Stomach	stomach
37	chr9:95997000-95999000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
38	chr9:95997000-95999200	Genic enhancers	Right Ventricle	heart
39	chr9:95997000-96001800	Strong transcription	HepG2	liver
40	chr9:95997000-96012400	Weak transcription	Fetal Kidney	kidney
41	chr9:95997200-95997600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:95997200-95997800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:95997200-95998200	Genic enhancers	Brain Germinal Matrix	brain
44	chr9:95997200-95998400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
45	chr9:95997200-95998400	Enhancers	Brain Anterior Caudate	brain
46	chr9:95997200-95998400	Enhancers	Brain Hippocampus Middle	brain
47	chr9:95997200-95998400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr9:95997400-95997600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:95997400-95997600	Enhancers	Fetal Brain Male	brain
50	chr9:95997400-95997800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links