Variant report

Variant	rs7865467
Chromosome Location	chr9:95982565-95982566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95964711..95966823-chr9:95982428..95983941,2	MCF-7	breast:
2	chr9:95982340..95984342-chr9:96001174..96003996,2	K562	blood:
3	chr9:95980802..95983532-chr9:95984355..95985930,2	MCF-7	breast:
4	chr9:95976952..95979660-chr9:95981802..95984086,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10739945	0.99[AFR][1000 genomes]
rs10992685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992686	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11788911	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11790111	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12683147	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34795796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4617217	0.99[AFR][1000 genomes]
rs56154239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7029773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7031132	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032194	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041398	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7048527	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9696691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95955800-95985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:95971200-95985800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:95974200-95985400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:95974400-95986800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:95978800-95985400	Weak transcription	Brain Germinal Matrix	brain
6	chr9:95979600-95982600	Enhancers	Duodenum Mucosa	Duodenum
7	chr9:95979600-95982800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:95979600-95983800	Enhancers	Pancreas	Pancrea
9	chr9:95979600-95986400	Enhancers	Fetal Heart	heart
10	chr9:95979600-95992200	Enhancers	Left Ventricle	heart
11	chr9:95979800-95983600	Enhancers	Psoas Muscle	Psoas
12	chr9:95979800-95984800	Enhancers	Right Ventricle	heart
13	chr9:95980000-95985400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:95980000-95985600	Weak transcription	HepG2	liver
15	chr9:95980200-95982800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr9:95980200-95985400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:95980200-95985600	Weak transcription	Small Intestine	intestine
18	chr9:95980600-95985400	Weak transcription	Fetal Intestine Large	intestine
19	chr9:95980600-95985400	Strong transcription	Fetal Intestine Small	intestine
20	chr9:95980600-95985400	Weak transcription	Right Atrium	heart
21	chr9:95980800-95982600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:95980800-95982600	Enhancers	Spleen	Spleen
23	chr9:95981400-95982800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:95981400-95985400	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:95981600-95982800	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:95981600-95983800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr9:95981600-95989200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:95981800-95983000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:95981800-95985600	Weak transcription	Brain Anterior Caudate	brain
30	chr9:95982000-95984600	Weak transcription	Hela-S3	cervix
31	chr9:95982200-95982800	Enhancers	Colonic Mucosa	Colon
32	chr9:95982400-95982800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:95982400-95985400	Weak transcription	Gastric	stomach
34	chr9:95982400-95985400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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