Variant report

Variant	rs11790665
Chromosome Location	chr9:97022241-97022242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97021632..97023442-chr9:97057310..97060089,2	MCF-7	breast:
2	chr9:97021249..97023395-chr9:97039780..97042509,4	MCF-7	breast:
3	chr9:97021406..97023043-chr9:97038524..97041223,2	K562	blood:
4	chr9:97021611..97023203-chr9:97065025..97066542,2	K562	blood:

Variant related genes	Relation type
ENSG00000175787	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10993121	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11789548	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794857	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13283037	0.82[ASN][1000 genomes]
rs57062938	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578812	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578813	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578816	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1054784	chr9:96976419-97025515	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540174	chr9:96976419-97025515	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97021000-97022400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:97021000-97022400	Active TSS	Colonic Mucosa	Colon
3	chr9:97021000-97022400	Active TSS	Fetal Brain Female	brain
4	chr9:97021000-97022600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:97021000-97022600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:97021000-97022600	Active TSS	Brain Angular Gyrus	brain
7	chr9:97021000-97022600	Active TSS	Brain Cingulate Gyrus	brain
8	chr9:97021000-97022600	Flanking Active TSS	Placenta	Placenta
9	chr9:97021000-97022600	Active TSS	Rectal Smooth Muscle	rectum
10	chr9:97021000-97022600	Active TSS	GM12878-XiMat	blood
11	chr9:97021000-97023200	Active TSS	Hela-S3	cervix
12	chr9:97021200-97022400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr9:97021200-97022400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:97021200-97022400	Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr9:97021200-97022400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr9:97021200-97022400	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr9:97021200-97022400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:97021200-97022400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:97021200-97022400	Active TSS	Brain Germinal Matrix	brain
20	chr9:97021200-97022400	Active TSS	Brain Hippocampus Middle	brain
21	chr9:97021200-97022400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr9:97021200-97022400	Active TSS	Fetal Intestine Large	intestine
23	chr9:97021200-97022400	Active TSS	Psoas Muscle	Psoas
24	chr9:97021200-97022400	Active TSS	Right Atrium	heart
25	chr9:97021200-97022400	Active TSS	NHEK	skin
26	chr9:97021200-97022600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:97021200-97022600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:97021200-97022600	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr9:97021200-97022600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr9:97021200-97022600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:97021200-97022600	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr9:97021200-97022600	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr9:97021400-97022400	Active TSS	H1 Cell Line	embryonic stem cell
34	chr9:97021400-97022400	Active TSS	H9 Cell Line	embryonic stem cell
35	chr9:97021400-97022400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:97021400-97022400	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr9:97021400-97022400	Active TSS	A549	lung
38	chr9:97021400-97022600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:97021400-97022600	Active TSS	K562	blood
40	chr9:97021400-97022800	Active TSS	HSMM	muscle
41	chr9:97021800-97022400	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr9:97021800-97022400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr9:97021800-97022400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr9:97021800-97022400	Flanking Active TSS	HMEC	breast
45	chr9:97021800-97022600	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr9:97021800-97022800	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chr9:97022000-97022400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr9:97022000-97022400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr9:97022000-97022400	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr9:97022000-97022400	Flanking Active TSS	Fetal Thymus	thymus

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