Variant report

Variant	rs11794857
Chromosome Location	chr9:97022624-97022625
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97021632..97023442-chr9:97057310..97060089,2	MCF-7	breast:
2	chr9:97021249..97023395-chr9:97039780..97042509,4	MCF-7	breast:
3	chr9:97021406..97023043-chr9:97038524..97041223,2	K562	blood:
4	chr9:97021611..97023203-chr9:97065025..97066542,2	K562	blood:

Variant related genes	Relation type
ENSG00000175787	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10993121	1.00[ASN][1000 genomes]
rs11789548	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790665	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13283037	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs57062938	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578812	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578813	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578816	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1054784	chr9:96976419-97025515	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540174	chr9:96976419-97025515	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97021000-97023200	Active TSS	Hela-S3	cervix
2	chr9:97021400-97022800	Active TSS	HSMM	muscle
3	chr9:97021800-97022800	Flanking Active TSS	Primary B cells from peripheral blood	blood
4	chr9:97022000-97022800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:97022000-97022800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr9:97022000-97023000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:97022000-97028600	Weak transcription	Small Intestine	intestine
8	chr9:97022200-97022800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:97022200-97022800	Enhancers	Fetal Heart	heart
10	chr9:97022200-97022800	Enhancers	Pancreas	Pancrea
11	chr9:97022200-97022800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr9:97022200-97022800	Enhancers	Thymus	Thymus
13	chr9:97022200-97023000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:97022200-97023000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:97022200-97023000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:97022200-97023000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr9:97022200-97023000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:97022200-97023000	Enhancers	Adipose Nuclei	Adipose
19	chr9:97022200-97023000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:97022200-97023000	Enhancers	Fetal Brain Male	brain
21	chr9:97022200-97023000	Enhancers	Gastric	stomach
22	chr9:97022200-97023000	Enhancers	Lung	lung
23	chr9:97022200-97023000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:97022200-97023000	Enhancers	Right Ventricle	heart
25	chr9:97022200-97023000	Enhancers	Stomach Mucosa	stomach
26	chr9:97022200-97023000	Enhancers	Spleen	Spleen
27	chr9:97022200-97023000	Flanking Active TSS	Dnd41	blood
28	chr9:97022200-97023000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr9:97022200-97023200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:97022200-97023400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:97022200-97023400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr9:97022200-97023600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:97022200-97024400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:97022200-97026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:97022200-97028400	Weak transcription	Fetal Intestine Small	intestine
36	chr9:97022200-97028400	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:97022200-97028600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr9:97022200-97031400	Weak transcription	Left Ventricle	heart
39	chr9:97022200-97031600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:97022200-97031600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:97022200-97031600	Weak transcription	HSMMtube	muscle
42	chr9:97022200-97033400	Weak transcription	Fetal Stomach	stomach
43	chr9:97022200-97040800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:97022200-97041800	Weak transcription	Fetal Lung	lung
45	chr9:97022200-97042600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:97022200-97055200	Weak transcription	Aorta	Aorta
47	chr9:97022400-97022800	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr9:97022400-97022800	Enhancers	Primary B cells from cord blood	blood
49	chr9:97022400-97022800	Weak transcription	Primary T cells from cord blood	blood
50	chr9:97022400-97022800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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